ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCTTCCTCTTCCTCTTCGC miRNA* GAGAGAGAGAGAGAGAGAAGAG mismatches: 3 bulges: 1 |
pre-miRNA
CCCGAAGAAAACGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGTCCGCTTCAACTAGGTAGGCTGAACCACTTTATGTGCTCAAAGTCTGACCTCAGCC
CGCCACTCGAATCTAGCGATGGGAGACGAGAAGCCGACGGTGGTGATGGCCAATCGAGAAAGAGATCTGGAGCTTCTGATGCCCGTCGCTGATAAAAGAC
GAAGGTTCTACTTCGAAGCCGTCTTCATCTTCTTCCTCTTCCTCTTCGCATCACCAGG
dot-bracket secondary structure
......((...(((.((((.(((((.(((((((..((((........(((((.....(((.((((((..(((.....))).(((.....)))..))))))
.)))..((..(((.(((((((((.....((((((...(((((((....))))(((........))))))..))))))....))))))))))))....)).
((((......)))))))))..))))..))))))).))))).)))))))..))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCCGAAGAAAACGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGTCCGCTTCAACTAGGTAGGCTGAACCACTTTATGTGCTCAAAGTCTGACCTCAGCC
CGCCACTCGAATCTAGCGATGGGAGACGAGAAGCCGACGGTGGTGATGGCCAATCGAGAAAGAGATCTGGAGCTTCTGATGCCCGTCGCTGATAAAAGAC
GAAGGTTCTACTTCGAAGCCGTCTTCATCTTCTTCCTCTTCCTCTTCGCATCACCAGG
dot-bracket secondary structure
......((...(((.((((.(((((.(((((((..((((........(((((.....(((.((((((..(((.....))).(((.....)))..))))))
.)))..((..(((.(((((((((.....((((((...(((((((....))))(((........))))))..))))))....))))))))))))....)).
((((......)))))))))..))))..))))))).))))).)))))))..))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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