ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIRf413
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTTATGAGCAATCCCCATT miRNA* TGGGGGTAAGTTCATGAAGGCA mismatches: 5 bulges: 1 |
pre-miRNA
AATTTTAGTTGGACTTTTGGATTGGGGGTAAGTTCATGAAGGCACAAACATCAGATAGGCAAAAAAAGATAGTAGCATCCTTATGAGCAATCCCCATTCC
TCAAGCTTCTGTATAGA
dot-bracket secondary structure
.((..(((..((.(((..(((.(((((((..((((((((..((((..........................)).))....)))))))).))))))).)))
..))))).))).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATTTTAGTTGGACTTTTGGATTGGGGGTAAGTTCATGAAGGCACAAACATCAGATAGGCAAAAAAAGATAGTAGCATCCTTATGAGCAATCCCCATTCC
TCAAGCTTCTGTATAGA
dot-bracket secondary structure
.((..(((..((.(((..(((.(((((((..((((((((..((((..........................)).))....)))))))).))))))).)))
..))))).))).))...
SIMILARITIES| miRBase no hits PMRD ath-miRf11150-akr: 0.000001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
