ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR2911
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCCGGGGGACGGACTGGGAA miRNA* CCCAGTTCTGAACCCGTCGA mismatches: 5 bulges: 1 |
pre-miRNA
GGGCTGGGCTCGGGGGTCCCAGTTCTGAACCCGTCGACTGTTGGCGGGCTGCTTGAGCTGCTAACGTGGCGAGAGCGGACCGCCTCGTGTCGGCCGGGGG
ACGGACTGGGAACGGCTCTTTCGGGAGCTTT
dot-bracket secondary structure
((((...)))).....(((((((((....(((((((((....(((((.((((((..(((((....)))))..)))))).)))))....))))).))))..
..)))))))))..((((((....))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGCTGGGCTCGGGGGTCCCAGTTCTGAACCCGTCGACTGTTGGCGGGCTGCTTGAGCTGCTAACGTGGCGAGAGCGGACCGCCTCGTGTCGGCCGGGGG
ACGGACTGGGAACGGCTCTTTCGGGAGCTTT
dot-bracket secondary structure
((((...)))).....(((((((((....(((((((((....(((((.((((((..(((((....)))))..)))))).)))))....))))).))))..
..)))))))))..((((((....))))))..
SIMILARITIES| miRBase peu-MIR2911: 0.00000003 PMRD peu-miR2911: 0.00000003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
