ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIRf174
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCTTGCATCAATTGAATCG miRNA* ATTCGCTTGGTGCAGGTCGAG mismatches: 3 bulges: 0 |
pre-miRNA
GGTCACCGTCTTGCTCGGATTCGCTTGGTGCAGGTCGAGAACTAATTGTCTAACACATCCACGAAGTTTTACTTGCTGGTTTGTGAGCAGGGATTGGATC
CCGCCTTGCATCAATTGAATCGGAGCCCTGATCGTGA
dot-bracket secondary structure
..((((.(((..((((.((((((.((((((((((.((.((.((((((.(((..((((.(((..((((...))))..)))..))))...))))))))).))
.)).)))))))))).)))))).))))...))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTCACCGTCTTGCTCGGATTCGCTTGGTGCAGGTCGAGAACTAATTGTCTAACACATCCACGAAGTTTTACTTGCTGGTTTGTGAGCAGGGATTGGATC
CCGCCTTGCATCAATTGAATCGGAGCCCTGATCGTGA
dot-bracket secondary structure
..((((.(((..((((.((((((.((((((((((.((.((.((((((.(((..((((.(((..((((...))))..)))..))))...))))))))).))
.)).)))))))))).)))))).))))...))).))))
SIMILARITIES| miRBase ath-MIR168a: 2e-18 PMRD ath-miRf10239-akr: 2e-18 microPC miR168: 0.000000000000008 | UniProt no hits RFAM MIR168: 4e-57 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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