ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGAGAA miRNA* CCCGCCTTGCATCAATTGAAT mismatches: 4 bulges: 0 |
pre-miRNA
GGGTCACCGTCTTGCTCGGATTCGCTTGGTGCAGGTCGAGAACTAATTGTCTAACACATCCACGAAGTTTTACTTGCTGGTTTGTGAGCAGGGATTGGAT
CCCGCCTTGCATCAATTGAATCGGAGCCCTGATCGTGAA
dot-bracket secondary structure
...((((.(((..((((.((((((.((((((((((.((.((.((((((.(((..((((.(((..((((...))))..)))..))))...))))))))).)
).)).)))))))))).)))))).))))...))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGTCACCGTCTTGCTCGGATTCGCTTGGTGCAGGTCGAGAACTAATTGTCTAACACATCCACGAAGTTTTACTTGCTGGTTTGTGAGCAGGGATTGGAT
CCCGCCTTGCATCAATTGAATCGGAGCCCTGATCGTGAA
dot-bracket secondary structure
...((((.(((..((((.((((((.((((((((((.((.((.((((((.(((..((((.(((..((((...))))..)))..))))...))))))))).)
).)).)))))))))).)))))).))))...))).)))).
SIMILARITIES| miRBase ath-MIR168a: 2e-18 PMRD ath-miRf10239-akr: 2e-18 microPC miR168: 0.000000000000008 | UniProt no hits RFAM MIR168: 1e-57 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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