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ABOUT THIS RECORD
ID:
MNEST000261
species:
Brassica napus
miRNA family:
miR168b
source:
miRNEST
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCCGCCTTGCATCAAATGAAT
miRNA*
TCGCCTGGTGCAGGTCGGGAA
mismatches:
3
bulges:
0
View larger
pre-miRNA
ATGATAAGGGTCACCGTCTTGCTCGGAT
TCGCCTGGTGCAGGTCGGGAA
CCAATTGTCTGACACATCCACGAAGTTTTACTTGCTGGTTTGTGAGCAGGG
ATTGGAT
CCCGCCTTGCATCAAATGAAT
CGGAGTCCTGATGGTGAAATGAATA
dot-bracket secondary structure
..........((((((((..((((.(((
(((..(((((((((.(((((.
((((((.((((.((((.(((..((((...))))..)))..))))..)))))
))))).)
)))).)))))))))..)))))
).))))...))))))))........
SIMILARITIES
miRBase
ath-MIR168a
:
6e-19
PMRD
ath-miRf10239-akr
:
6e-19
microPC
miR168
:
0.000000000000008
UniProt
no hits
RFAM
MIR168: 3e-70
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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