ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCCTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAAATGAAT mismatches: 4 bulges: 0 |
pre-miRNA
GATGATAAGGGTCACCGTCTTGCTCGGATTCGCCTGGTGCAGGTCGGGAACCAATTGTCTGACACATCCACGAAGTTTTACTTGCTGGTTTGTGAGCAGG
GATTGGATCCCGCCTTGCATCAAATGAATCGGAGTCCTGATGGTGAAATGAATAA
dot-bracket secondary structure
...........((((((((..((((.((((((..(((((((((.(((((.((((((.((((.((((.(((..((((...))))..)))..))))..))))
)))))).))))).)))))))))..)))))).))))...)))))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATGATAAGGGTCACCGTCTTGCTCGGATTCGCCTGGTGCAGGTCGGGAACCAATTGTCTGACACATCCACGAAGTTTTACTTGCTGGTTTGTGAGCAGG
GATTGGATCCCGCCTTGCATCAAATGAATCGGAGTCCTGATGGTGAAATGAATAA
dot-bracket secondary structure
...........((((((((..((((.((((((..(((((((((.(((((.((((((.((((.((((.(((..((((...))))..)))..))))..))))
)))))).))))).)))))))))..)))))).))))...)))))))).........
SIMILARITIES| miRBase ath-MIR168a: 6e-19 PMRD ath-miRf10239-akr: 6e-19 microPC miR168: 0.000000000000009 | UniProt no hits RFAM MIR168: 3e-70 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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