ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIRf102
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATTCCGTCGGTATATTCCGA miRNA* GAAATTCCGACGGAATGTG mismatches: 2 bulges: 2 |
pre-miRNA
ATTGAAATTCCGACGGAATGTGTCCGTTAGTATATTCCGACGGACACATTCCGTCGGTATATTCCGA
dot-bracket secondary structure
.(((.(((.(((((((((((((((((((..........)))))))))))))))))))...))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTGAAATTCCGACGGAATGTGTCCGTTAGTATATTCCGACGGACACATTCCGTCGGTATATTCCGA
dot-bracket secondary structure
.(((.(((.(((((((((((((((((((..........)))))))))))))))))))...))).)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12128-akr: 0.00001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
