ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTGCTCTTTCTGTCAGA mismatches: 1 bulges: 2 |
pre-miRNA
CATAAAGAAAGATCTCTGGAGATGGAAGAACTGCGAGTGAATGAGTTGGGACAAAAGAAAAACATAGCAACTGACAGAAGAGAGTGAGCACACAAAAGTA
ATCTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTGTCAGATTCTAGTGCTGATCTCTTTGGCCTGTCCTTGTTCTCTTTGTCTCAA
TCTCTCTCTCTCTCTCTCACAT
dot-bracket secondary structure
......((.(((.....(((((.(((.((...(((((.(((((((.((((...(((((......(((((.(((((((((((((((((((((.((((((((
(..((((.....)))).))))))...))).))))))))).))).))))))))).......)))))...)))))..))))..)))))))..))))).))..
))).)))))...))).))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATAAAGAAAGATCTCTGGAGATGGAAGAACTGCGAGTGAATGAGTTGGGACAAAAGAAAAACATAGCAACTGACAGAAGAGAGTGAGCACACAAAAGTA
ATCTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTGTCAGATTCTAGTGCTGATCTCTTTGGCCTGTCCTTGTTCTCTTTGTCTCAA
TCTCTCTCTCTCTCTCTCACAT
dot-bracket secondary structure
......((.(((.....(((((.(((.((...(((((.(((((((.((((...(((((......(((((.(((((((((((((((((((((.((((((((
(..((((.....)))).))))))...))).))))))))).))).))))))))).......)))))...)))))..))))..)))))))..))))).))..
))).)))))...))).))....
SIMILARITIES| miRBase aly-MIR156a: 2e-53 PMRD bna-miR156a: 7e-41 microPC miR156: 3e-40 | UniProt no hits RFAM mir-156: 4e-24 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045263) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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