ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTT miRNA* GATCATGTGGCAGTTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
GAGAGGCGCACCAGCATCTGATGAAGCTGCCAGCATGATCTTAACTTCTCTCTCTATATATTATATATGTAGATTTGATCAGGGAAGATCAGATCATGTG
GCAGTTTCACCCGTTGATGGTTGCATCAA
dot-bracket secondary structure
.(((.((......)).)))..(((((((((((.((((((((...(((((((.(((((((((...))))))))).......)))))))...))))))))))
)))))))))....((((((....))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGAGGCGCACCAGCATCTGATGAAGCTGCCAGCATGATCTTAACTTCTCTCTCTATATATTATATATGTAGATTTGATCAGGGAAGATCAGATCATGTG
GCAGTTTCACCCGTTGATGGTTGCATCAA
dot-bracket secondary structure
.(((.((......)).)))..(((((((((((.((((((((...(((((((.(((((((((...))))))))).......)))))))...))))))))))
)))))))))....((((((....))))))
SIMILARITIES| miRBase bra-MIR167d: 0.000000000007 PMRD bra-miR167d: 0.000000000007 microPC miR167: 4e-44 | UniProt no hits RFAM MIR167_1: 0.0000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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