ABOUT THIS RECORDspecies: Brassica napus
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTGATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
GAGAAAAAGGAGCGAAAGATGCTGGAGGCAGCGGTTGATCGATCTCTTTGTGGGAAATTTTGGAAAAAAAAACTCAAAGCATGAACAGATCGATAAACCT
CTGCATCCAGCGGTCGCCACTTCATCACTC
dot-bracket secondary structure
..((..(((..((((....(((((((.((((.((((.((((((((.((((((.((..((((....))))....))....)))))).)))))))).)))).
)))).))))))).))))..)))..))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGAAAAAGGAGCGAAAGATGCTGGAGGCAGCGGTTGATCGATCTCTTTGTGGGAAATTTTGGAAAAAAAAACTCAAAGCATGAACAGATCGATAAACCT
CTGCATCCAGCGGTCGCCACTTCATCACTC
dot-bracket secondary structure
..((..(((..((((....(((((((.((((.((((.((((((((.((((((.((..((((....))))....))....)))))).)))))))).)))).
)))).))))))).))))..)))..))....
SIMILARITIES| miRBase ath-MIR162a: 0.000000000007 PMRD ath-miR162a: 0.000000000007 microPC miR162: 0.0000000001 | UniProt no hits RFAM MIR162_2: 9e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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