ABOUT THIS RECORDspecies: Brassica napus
miRNA family: miR167a
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCATGTTCGTAGTTTCACC miRNA* TGAAGCTGCCAGCATGATCTA mismatches: 3 bulges: 0 |
pre-miRNA
TATGGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTA
GATCATGTTCGTAGTTTCACCCGTTGACTGTCGCACCC
dot-bracket secondary structure
...(((((..(((((.....(((((((((.((((((((((((((.(((((((((((((((((((.......)))))))))...)))))))).)).)))))
))))))))).))))))))).....)).)))..))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATGGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTA
GATCATGTTCGTAGTTTCACCCGTTGACTGTCGCACCC
dot-bracket secondary structure
...(((((..(((((.....(((((((((.((((((((((((((.(((((((((((((((((((.......)))))))))...)))))))).)).)))))
))))))))).))))))))).....)).)))..))))).
SIMILARITIES| miRBase bra-MIR167a: 6e-71 PMRD bra-miR167a: 6e-71 microPC miR167: 3e-51 | UniProt no hits RFAM MIR167_1: 7e-65 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST045889) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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