miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST000293
species:
Brassica napus
miRNA family:
MIR408
source:
miRNEST
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCACTGCCTCTTCCCTGGCT
miRNA*
ACAGGGAACAAGCAGAGCATG
mismatches:
5
bulges:
0
View larger
pre-miRNA
ACCAGAGAGAG
ACAGGGAACAAGCAGAGCATG
GATTGAGTTTTTACCAAAACATCAAATGACTATGTTTGGTCTCTTCCCA
TGCACTGCCTCTTCCCTGG
CT
CCCTCCTC
dot-bracket secondary structure
....(((.(((
.(((((((...((((.(((((
(...(((.....((((((.(((.........))))))))))))...)))
))).))))...))))))).
))
).)))...
SIMILARITIES
miRBase
ath-MIR408
:
2e-33
PMRD
ath-miR408
:
2e-33
microPC
miR408
:
0.00000002
UniProt
no hits
RFAM
MIR408: 8e-30
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record