ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGG miRNA* AGGGAACAAGCAGAGCATGG mismatches: 5 bulges: 0 |
pre-miRNA
AACGAGAGAGAGACAGGGAACAAGCAGAGCATGGATCGAGTTTTTACCAAAACATCAAATGACTATGTTTGGTCTCTTCCCATGCACTGCCTCTTCCCTG
GCTCCCTGTTTC
dot-bracket secondary structure
....((.(((...(((((((...((((.((((((...(((.....((((((.(((.........)))))))))..))).)))))).))))...)))))))
.))).)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACGAGAGAGAGACAGGGAACAAGCAGAGCATGGATCGAGTTTTTACCAAAACATCAAATGACTATGTTTGGTCTCTTCCCATGCACTGCCTCTTCCCTG
GCTCCCTGTTTC
dot-bracket secondary structure
....((.(((...(((((((...((((.((((((...(((.....((((((.(((.........)))))))))..))).)))))).))))...)))))))
.))).)).....
SIMILARITIES| miRBase ath-MIR408: 5e-31 PMRD ath-miR408: 5e-31 microPC miR408: 0.00000002 | UniProt no hits RFAM MIR408: 2e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
