ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAAAGAGAGCAC miRNA* GCTCTCTTTACTTCTGTC mismatches: 1 bulges: 1 |
pre-miRNA
TGAGAAAATGTTGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGTC
dot-bracket secondary structure
............((((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAGAAAATGTTGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGTC
dot-bracket secondary structure
............((((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).))))))))
SIMILARITIES| miRBase ath-MIR156h: 2e-30 PMRD ath-miR156h: 2e-30 microPC miR157: 2e-42 | UniProt no hits RFAM mir-156: 0.0003 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045727) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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