ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAAAGAGAGCAC miRNA* GCTCTCTTTACTTCTGCCACC mismatches: 1 bulges: 1 |
pre-miRNA
ATGAGAAAATGTTGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAAAAGAGAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGCCACCAT
CATCGCG
dot-bracket secondary structure
....((..(((.((.((((((((((((((((((..((.((....((((((......)))))).....)).))..)))))))))))).)))))).)).)))
..))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGAGAAAATGTTGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAAAAGAGAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGCCACCAT
CATCGCG
dot-bracket secondary structure
....((..(((.((.((((((((((((((((((..((.((....((((((......)))))).....)).))..)))))))))))).)))))).)).)))
..))...
SIMILARITIES| miRBase ath-MIR156h: 3e-41 PMRD ath-miR156h: 3e-41 microPC miR157: 5e-34 | UniProt no hits RFAM mir-156: 0.000006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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