ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTT miRNA* GGGAAACTCAACGTTGGCAAG mismatches: 5 bulges: 0 |
pre-miRNA
AGAAAATTATTAGATGAAAGAAACCAGTGAAAGGGAAACTCAACGTTGGCAAGGAAACTATAATCAGTGAGACAATATTATTGCTCACAAGATTGAGGTT
GAGTCTTTGCCAAAGGAGAGTTGCCCTTTTACTGTTTTTTTCTTTTGATTGTGTTCA
dot-bracket secondary structure
.(((.((.((((((.(((((((((.((((((((((.(((((....((((((((((((((.(((((.(((((.((((...)))))))))..))))).))))
...))))))))))....))))).))))))))))))))))))).)))))).)).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAAAATTATTAGATGAAAGAAACCAGTGAAAGGGAAACTCAACGTTGGCAAGGAAACTATAATCAGTGAGACAATATTATTGCTCACAAGATTGAGGTT
GAGTCTTTGCCAAAGGAGAGTTGCCCTTTTACTGTTTTTTTCTTTTGATTGTGTTCA
dot-bracket secondary structure
.(((.((.((((((.(((((((((.((((((((((.(((((....((((((((((((((.(((((.(((((.((((...)))))))))..))))).))))
...))))))))))....))))).))))))))))))))))))).)))))).)).))).
SIMILARITIES| miRBase vvi-MIR399b: 0.0001 PMRD vvi-miR399b: 0.0001 microPC miR399: 2e-49 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST045985) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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