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ABOUT THIS RECORD

ID: MNEST000310
species: Brassica napus
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATACCA

miRNA*
 GTGTATAGAGTAGTCAAGCATG

mismatches: 3
bulges: 1
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pre-miRNA
 AATAATAGTCGTGCCTGGCTCCCTGTATACCACAAGCAAACACCGATCTCATTATGAAATCGATCGCTAGTGGTGTATAGAGTAGTCAAGCATGACCAAA
GC

dot-bracket secondary structure
.......(((((((.(((((..(((((((((((.(((......((((.(((...))).))))...))).)))))))))))...))))).)))))))....
..


SIMILARITIES
miRBase aly-MIR160b: 1e-22

PMRD ath-miRf10238-akr: 9e-17

microPC miR160: 1e-21		UniProt no hits

RFAM mir-160: 4e-22		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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