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ABOUT THIS RECORD
ID:
MNEST000315
species:
Brassica napus
miRNA family:
MIRf257
source:
miRNEST
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTGATGATGCTGCTGCTGCTA
miRNA*
TGGTGGCTGCTTTGATCACTC
mismatches:
4
bulges:
2
View larger
pre-miRNA
CCATTTCCTGGGTTCTTTGCTA
TGGTGGCTGCTTTGATCACTC
TACTTGTTGATTTCATGGGGACTCAGTATTATGAGAGGAGGCAAGAGAGGA
GTGATG
ATGCTGCTGCTGCTA
GTGAAGCTTCCGCTGCTGT
dot-bracket secondary structure
........((((..((((((((
(((((((.((....(((((((
(.((((((..((((((((..((...)).))))))))...))))))...)))
))))).
..)).))))))).))
))))))..)))).......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|O04089|ZIP4_ARATH: 0.0000005
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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