ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR1886
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGAGAAGTGAGAAGAAACG miRNA* ATTCCTCTCTCTTTCTCTCTTC mismatches: 4 bulges: 1 |
pre-miRNA
GAGAAAGGACCTGAGAGAAGTGAGAAGAAACGCAAGATTAAAAGAGAGAGAACGAGACTTCTCTCGCTGTTTCCTCTTCTCATATCACCTTTAGCTTCCG
ATTCCTCTCTCTTTCTCTCTTCTCTGCCGT
dot-bracket secondary structure
......(((...((((((((.((((.(((.((.(((.(((((((((.((((.(((((....)))))...))))))))............)))))))).))
.))).))))..))))))))...))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAGAAAGGACCTGAGAGAAGTGAGAAGAAACGCAAGATTAAAAGAGAGAGAACGAGACTTCTCTCGCTGTTTCCTCTTCTCATATCACCTTTAGCTTCCG
ATTCCTCTCTCTTTCTCTCTTCTCTGCCGT
dot-bracket secondary structure
......(((...((((((((.((((.(((.((.(((.(((((((((.((((.(((((....)))))...))))))))............)))))))).))
.))).))))..))))))))...))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
