ABOUT THIS RECORDspecies: Brassica oleracea var. alboglabra
miRNA family: MIRf118
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCCGGATACGGATCCGA miRNA* GGGCTGGGATCCGGGTATGGG mismatches: 2 bulges: 2 |
pre-miRNA
GACCAAACACCCGGACCCGGATACGGATCCGATCCGGATGCTGTACGGGTTACCGATCGGAGACCAAGACGTGAAAGGTATGGAGATGGGTGGTGGTGGG
AGTTTTAGCTCGCTTTTGGCGTCGAATATGCAGTTGGGTCTTGGTGGGATCATCCTAGACGGGTCGGGCTGGGATCCGGGTATGGGACTAAAGA
dot-bracket secondary structure
.........((((.((((((((.(((.(((((((((....(((..(((....)))..)))..((((((((.(((...(((((..((((..(((.((((((
........)))))).))).))))...)))))..))).))))))))((((...))))...))))))))))))..)))))))).))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GACCAAACACCCGGACCCGGATACGGATCCGATCCGGATGCTGTACGGGTTACCGATCGGAGACCAAGACGTGAAAGGTATGGAGATGGGTGGTGGTGGG
AGTTTTAGCTCGCTTTTGGCGTCGAATATGCAGTTGGGTCTTGGTGGGATCATCCTAGACGGGTCGGGCTGGGATCCGGGTATGGGACTAAAGA
dot-bracket secondary structure
.........((((.((((((((.(((.(((((((((....(((..(((....)))..)))..((((((((.(((...(((((..((((..(((.((((((
........)))))).))).))))...)))))..))).))))))))((((...))))...))))))))))))..)))))))).))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q94AR6|DOF31_ARATH: 0.00000000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
