ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR1146
source: miRNEST
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGGGTCCGATCGGGAAGGCT miRNA* CTTGGCTGACTTGGCTCACCT mismatches: 2 bulges: 2 |
pre-miRNA
ACTTGGCCGGTGATTTCGTGAGCTTGGCTGACTTGGCTCACCTCCCGTTCACTGATTACTTGGTGGGTCCGATCGGGAAGGCTTACATGATCAAAGATAG
GA
dot-bracket secondary structure
.((((.....(((((..((((((((..((((.((((((((((......((...))......)))))).))))))))..))))))))..)))))....)))
).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTTGGCCGGTGATTTCGTGAGCTTGGCTGACTTGGCTCACCTCCCGTTCACTGATTACTTGGTGGGTCCGATCGGGAAGGCTTACATGATCAAAGATAG
GA
dot-bracket secondary structure
.((((.....(((((..((((((((..((((.((((((((((......((...))......)))))).))))))))..))))))))..)))))....)))
).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P42761|GSTF3_ARATH: 0.00000000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
