ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIRf1281
source: miRNEST
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGTTTGGTTGCTGAGAAAA miRNA* TTCTCGGTGACCAGATTCCGATA mismatches: 2 bulges: 2 |
pre-miRNA
ATTATTTCATTTCTGTTTGGTTGCTGAGAAAACGGTGGAAAATTTTCTGAATTTTTCTTTCTCGGTGACCAGATTCCGATATTTTTG
dot-bracket secondary structure
...........((.(((((((((((((((((.....(((((((((...))))))))))))))))))))))))))...))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTATTTCATTTCTGTTTGGTTGCTGAGAAAACGGTGGAAAATTTTCTGAATTTTTCTTTCTCGGTGACCAGATTCCGATATTTTTG
dot-bracket secondary structure
...........((.(((((((((((((((((.....(((((((((...))))))))))))))))))))))))))...))........
SIMILARITIES| miRBase vvi-MIR3629b: 0.001 PMRD ptc-miRf12247-akr: 0.001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
