ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: miR393b
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCATGCGATCTCTTTGGAAG miRNA* TCTACAGTGATCGCATTGATCC mismatches: 2 bulges: 1 |
pre-miRNA
GGTTGCAAGCTTCTACAGTGATCGCATTGATCCAGTTTATTACTCTATTCGAGTTTGATTCATTCATCTATCATATCCATGAAAGCAGCTGCCAATTTTT
TTATCCCAGCTGATAATTTGCATCATGCGATCTCTTTGGAAGTTTCCGTC
dot-bracket secondary structure
...((.(((((((((.((.((((((((.(((.(((.((((.((((.....)))).(((.....))).((.((((....)))).))((((((.........
......)))))))))).))).))))))))))).)).))))))))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGTTGCAAGCTTCTACAGTGATCGCATTGATCCAGTTTATTACTCTATTCGAGTTTGATTCATTCATCTATCATATCCATGAAAGCAGCTGCCAATTTTT
TTATCCCAGCTGATAATTTGCATCATGCGATCTCTTTGGAAGTTTCCGTC
dot-bracket secondary structure
...((.(((((((((.((.((((((((.(((.(((.((((.((((.....)))).(((.....))).((.((((....)))).))((((((.........
......)))))))))).))).))))))))))).)).))))))))).))..
SIMILARITIES| miRBase no hits PMRD no hits microPC miR393: 1e-35 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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