ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCTGT miRNA* AGGCAGTCTCCTTAGCTAA mismatches: 2 bulges: 2 |
pre-miRNA
TGTCGTTTGGTAGCCAAGGATGACTTGCCTGTTTCTTCTTTACCAAGGGTACTTGGTGTTCTTAAAGACCTTGTTTGGTTGGTTATCAGGCAGTCTCCTT
AGCTAACCTCACAA
dot-bracket secondary structure
....((..((((((.(((((.((((.(((((.....((...(((((((((.(((..........)))))))...))))).))....))))))))))))))
.))).)))..))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTCGTTTGGTAGCCAAGGATGACTTGCCTGTTTCTTCTTTACCAAGGGTACTTGGTGTTCTTAAAGACCTTGTTTGGTTGGTTATCAGGCAGTCTCCTT
AGCTAACCTCACAA
dot-bracket secondary structure
....((..((((((.(((((.((((.(((((.....((...(((((((((.(((..........)))))))...))))).))....))))))))))))))
.))).)))..))..
SIMILARITIES| miRBase ath-MIR169m: 0.00000000002 PMRD ath-miR169m: 0.00000000002 microPC miR169: 2e-49 | UniProt no hits RFAM MIR169_5: 0.0000000004 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045883) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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