ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIRf493
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCTCGGACCAGGCTTCATT miRNA* TGAAGTTTGATCCAAGATCCT mismatches: 2 bulges: 0 |
pre-miRNA
TTGGAGTTGTTTGGAATGAAGTTTGATCCAAGATCCTTTTTGCATGTGTGTTTTTTAGGGATCTCGGACCAGGCTTCATTCTTGACAATTGT
dot-bracket secondary structure
)...(((((((.(((((((((((((.(((.((((((((...(((....))).....)))))))).))).))))))))))))).)))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGAGTTGTTTGGAATGAAGTTTGATCCAAGATCCTTTTTGCATGTGTGTTTTTTAGGGATCTCGGACCAGGCTTCATTCTTGACAATTGT
dot-bracket secondary structure
)...(((((((.(((((((((((((.(((.((((((((...(((....))).....)))))))).))).))))))))))))).)))))))..
SIMILARITIES| miRBase ptc-MIR166o: 7.0E-11 PMRD ptc-miR166o: 7.0E-11 microPC miR166: 1.0E-6 | UniProt no hits RFAM 6mir-166: 1.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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