ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGTACGTGCT miRNA* CATATACCCTTACTCTCCATC mismatches: 4 bulges: 0 |
pre-miRNA
AACGACTTCTTTTTGAAGATATGGTTCATGCTGGAGAAGCAGGGTACGTGCTAAATCCATGATGTGATTTAGCATATACCCTTACTCTCCATCTTGAATC
GGTTTCTTTAATTCTTCACAA
dot-bracket secondary structure
............(((((((..(((((((...((((((...((((((.((((((((((((...)).)))))))))).))))))...))))))...))))))
)...)))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACGACTTCTTTTTGAAGATATGGTTCATGCTGGAGAAGCAGGGTACGTGCTAAATCCATGATGTGATTTAGCATATACCCTTACTCTCCATCTTGAATC
GGTTTCTTTAATTCTTCACAA
dot-bracket secondary structure
............(((((((..(((((((...((((((...((((((.((((((((((((...)).)))))))))).))))))...))))))...))))))
)...)))))))..........
SIMILARITIES| miRBase ptc-MIR164f: 0.000006 PMRD ptc-miR164f: 0.000006 microPC miR164: 0.00009 | UniProt no hits RFAM MIR164: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
