ABOUT THIS RECORDspecies: Citrus aurantium
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Citrus aurantium Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGTACA miRNA* TGCTCTCTCTTCTCCTGTCATT mismatches: 1 bulges: 1 |
pre-miRNA
GAACTTGTTTGATGACAGAAGAGAGAGAGTACAACCCGCCATTAGCTAAAGAGTCTTTGCTTTTGTTGGGAGTGTGCTCTCTCTTCTCCTGTCATTGAGT
TATTT
dot-bracket secondary structure
.(((((....((((((((.((((((((((((((.((((.((..(((.((((...)))))))..)).))))..))))))))))).))).))))))))))))
)....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAACTTGTTTGATGACAGAAGAGAGAGAGTACAACCCGCCATTAGCTAAAGAGTCTTTGCTTTTGTTGGGAGTGTGCTCTCTCTTCTCCTGTCATTGAGT
TATTT
dot-bracket secondary structure
.(((((....((((((((.((((((((((((((.((((.((..(((.((((...)))))))..)).))))..))))))))))).))).))))))))))))
)....
SIMILARITIES| miRBase rco-MIR156e: 1e-25 PMRD vvi-miR156a: 1e-22 microPC miR157: 0.000000000000001 | UniProt no hits RFAM mir-156: 2e-24 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
