ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: MIR1448
source: miRNEST
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCCCACACCTCCCATCCC miRNA* GATGGGTGAGTTGGGAAAATA mismatches: 3 bulges: 2 |
pre-miRNA
GGAGAAGCATGAGAAGAAGACTGGACTGGGGGAAGTCTTGGAGATGGGTGAGTTGGGAAAATAATAACTTTCTTCACGAAAGAAAGCAATTTTTTTCCCA
CACCTCCCATCCCTAAGATTTTCTTCAGTTCCTTCCTCTCTTTACCTGCCTT
dot-bracket secondary structure
((...((...((((.((((...(((((((((((((((((((.((((((...((((((((((.(((..(((((((.....)))))))..))).))))))))
.))..)))))).))))))))))))))))))))))).)))).....)).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAGAAGCATGAGAAGAAGACTGGACTGGGGGAAGTCTTGGAGATGGGTGAGTTGGGAAAATAATAACTTTCTTCACGAAAGAAAGCAATTTTTTTCCCA
CACCTCCCATCCCTAAGATTTTCTTCAGTTCCTTCCTCTCTTTACCTGCCTT
dot-bracket secondary structure
((...((...((((.((((...(((((((((((((((((((.((((((...((((((((((.(((..(((((((.....)))))))..))).))))))))
.))..)))))).))))))))))))))))))))))).)))).....)).))..
SIMILARITIES| miRBase csi-MIR472: 3e-33 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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