ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTGGTGCGGTTCAATAAGA miRNA* TGATTGAGCCGTGCCAATATC mismatches: 1 bulges: 0 |
pre-miRNA
ATGGATGGGTACAACGGGATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATCACGTG
CCACTCGC
dot-bracket secondary structure
...((..(((((.....(((((((((((((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))))))))))))..)))
))..))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGGATGGGTACAACGGGATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATCACGTG
CCACTCGC
dot-bracket secondary structure
...((..(((((.....(((((((((((((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))))))))))))..)))
))..))..
SIMILARITIES| miRBase crt-MIR171: 1e-56 PMRD vvi-miR171c: 4e-22 microPC miR171: 5e-40 | UniProt no hits RFAM MIR171_1: 1e-22 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST046797) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
