ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR3516
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGGGTGATATTGACAGAGA miRNA* TTGGTTGATAGCTGCCTGGCAT mismatches: 4 bulges: 1 |
pre-miRNA
CTGGAAAGCGACCTGGGTGATATTGACAGAGAAGTGACTCCTTGGTTGATAGCTGCCTGGCATCCTCCTTG
dot-bracket secondary structure
..(((....((.(((((((.(((((((.(((.((...)).))).)))))))..)))))))..)).)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTGGAAAGCGACCTGGGTGATATTGACAGAGAAGTGACTCCTTGGTTGATAGCTGCCTGGCATCCTCCTTG
dot-bracket secondary structure
..(((....((.(((((((.(((((((.(((.((...)).))).)))))))..)))))))..)).)))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9SFU3|PPA15_ARATH: 0.0005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
