ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATAGCATCATGAGCAATCA miRNA* ACTGCTCATGATGTTATATCG mismatches: 1 bulges: 0 |
pre-miRNA
GAAAAGATTTTGTATAGCATCATGAGCAATCAGCCTTATATTTTTAGCAGAGTGACTGCTCATGATGTTATATCGATTCATCC
dot-bracket secondary structure
.....((.((.(((((((((((((((((.(((..(((............)))))).))))))))))))))))).)).))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAAAGATTTTGTATAGCATCATGAGCAATCAGCCTTATATTTTTAGCAGAGTGACTGCTCATGATGTTATATCGATTCATCC
dot-bracket secondary structure
.....((.((.(((((((((((((((((.(((..(((............)))))).))))))))))))))))).)).))....
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 0.000000001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
