ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR403
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* GGTTTGTGCGTGAATTTAATA mismatches: 0 bulges: 0 |
pre-miRNA
ATTCAAGGAGAGGCATGTTTCGGGTTTGTGCGTGAATTTAATAAAATAACCGCTTCTTTTAATCTCGTTCCCCCATTTTTTGTTAGTAACAAATTTTTGC
CGTCAGTGTTAGATTCACGCACAAACTCGTGATGTGTCTTTTCTTTTA
dot-bracket secondary structure
....(((((((((((((((.(((((((((((((((((((((((.....((.((.........................((((((...)))))).....))
.))...))))))))))))))))))))))).)))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTCAAGGAGAGGCATGTTTCGGGTTTGTGCGTGAATTTAATAAAATAACCGCTTCTTTTAATCTCGTTCCCCCATTTTTTGTTAGTAACAAATTTTTGC
CGTCAGTGTTAGATTCACGCACAAACTCGTGATGTGTCTTTTCTTTTA
dot-bracket secondary structure
....(((((((((((((((.(((((((((((((((((((((((.....((.((.........................((((((...)))))).....))
.))...))))))))))))))))))))))).)))))))))))))))...
SIMILARITIES| miRBase csi-MIR403: 1e-69 PMRD vvi-miR403c: 0.00000003 microPC miR403: 3e-57 | UniProt no hits RFAM MIR403: 0.000000009 | most similar mature miRNAs |
Identical with: miR403 from microPC (MNEST045432) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
