ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: miR857
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGAATGTTGAATGGTGGCTAT miRNA* GACATCATTTGAATTCAAATGG mismatches: 3 bulges: 1 |
pre-miRNA
AAATTCAAAGACATCATTTGAATTCAAATGGGAGGTGGCCGAGAACTTTGAAAAGTAATTGGAAGTGGCCAAAACTATTTTGAATGTTGAATGGTGGCTA
TTGAATG
dot-bracket secondary structure
..((((((((.(((((((((((((((((..((...(((((....(((((...((....)).))))))))))...))..))))))).)))))))))).)).
)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATTCAAAGACATCATTTGAATTCAAATGGGAGGTGGCCGAGAACTTTGAAAAGTAATTGGAAGTGGCCAAAACTATTTTGAATGTTGAATGGTGGCTA
TTGAATG
dot-bracket secondary structure
..((((((((.(((((((((((((((((..((...(((((....(((((...((....)).))))))))))...))..))))))).)))))))))).)).
)))))).
SIMILARITIES| miRBase csi-MIR857: 3e-47 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
