ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: miR3952
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGGGCCTTTCTAGAGCAC miRNA* GCTGTAGAAAGGCCCCTCAAC mismatches: 2 bulges: 0 |
pre-miRNA
ATTCTTTCATGTGCTGTAGAAAGGCCCCTCAACCTCGGAAACCTCACCATGGACTGGGAACGAAGAAAGTGGGATCTGATGGTTGGCATTGAAGGTGGCA
AGCTGCAGAAGAAAGATGGCGTTTTCAAAGTTGAAGGGCCTTTCTAGAGCACTGGAATCCG
dot-bracket secondary structure
.....(((..(((((.(((((((((((.(((((...((((((.(((((((....((....))......))))..((((.(((((.((..........)).
))))))))).......))).))))))...))))).))))))))))).)))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTCTTTCATGTGCTGTAGAAAGGCCCCTCAACCTCGGAAACCTCACCATGGACTGGGAACGAAGAAAGTGGGATCTGATGGTTGGCATTGAAGGTGGCA
AGCTGCAGAAGAAAGATGGCGTTTTCAAAGTTGAAGGGCCTTTCTAGAGCACTGGAATCCG
dot-bracket secondary structure
.....(((..(((((.(((((((((((.(((((...((((((.(((((((....((....))......))))..((((.(((((.((..........)).
))))))))).......))).))))))...))))).))))))))))).)))))..)))....
SIMILARITIES| miRBase csi-MIR3952: 7e-71 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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