miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST000413
species: Citrus sinensis
miRNA family: MIR1886
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGAGACAAGTGAGATGAAAGA

miRNA*
TTTCTTCTCTGTTTGTATTCGAT

mismatches: 3
bulges: 2

View larger
pre-miRNA
GGAGAACACGTACCAACGAAACGAGACAAGTGAGATGAAAGAGCGGGAAAAGGACTGGCACGTAAAGTTGTTGCAGAGCAGGACGAGGGTTGAAAATTGA
TATATTATCGCATTTTGGTTTGTGTCATTCGAAGCTCAGCTCCCTCAACTGAACTTTCTTCTCTGTTTGTATTCGATTCGTTGAACTTAGTAAAC


dot-bracket secondary structure
.............(((((((.(((((((((.((((.(((((..(((....(((...(((.(((....(((((....))))).))).(((((......(((
((((..((((.....)))).))))))).....))))).))).)))...)))..))))).))))..))))).)))).)))))))............



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;