ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: miR160a
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTATGAGGAGCCATGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
ATACCTATGTCTATATATTTATAATTATGTGCCTGGCTCCCTGTATGCCATTTGCAGAGTCAATCGAAACATCGATGGCCTCCGTGGATGGCGTATGAGG
AGCCATGCATATTCCATGTATAATATATACCCATAGA
dot-bracket secondary structure
....(((((..((((((((((((...((((((.(((((((.((((((((((((((.(((...(((((....)))))...))).)))))))))))))).))
))))).))))))....)))).))))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATACCTATGTCTATATATTTATAATTATGTGCCTGGCTCCCTGTATGCCATTTGCAGAGTCAATCGAAACATCGATGGCCTCCGTGGATGGCGTATGAGG
AGCCATGCATATTCCATGTATAATATATACCCATAGA
dot-bracket secondary structure
....(((((..((((((((((((...((((((.(((((((.((((((((((((((.(((...(((((....)))))...))).)))))))))))))).))
))))).))))))....)))).))))))))..))))).
SIMILARITIES| miRBase csi-MIR160: 6e-74 PMRD ptc-miR160b: 6e-31 microPC miR160: 6e-28 | UniProt no hits RFAM mir-160: 7e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
