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ABOUT THIS RECORD
ID:
MNEST000414
species:
Citrus sinensis
miRNA family:
miR160a
source:
miRNEST
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCGTATGAGGAGCCATGCATA
miRNA*
TGCCTGGCTCCCTGTATGCCA
mismatches:
2
bulges:
0
View larger
pre-miRNA
ATACCTATGTCTATATATTTATAATTATG
TGCCTGGCTCCCTGTATGCCA
TTTGCAGAGTCAATCGAAACATCGATGGCCTCCGTGGATG
GCGTATGAGG
AGCCATGCATA
TTCCATGTATAATATATACCCATAGA
dot-bracket secondary structure
....(((((..((((((((((((...(((
(((.(((((((.(((((((((
(((((.(((...(((((....)))))...))).)))))))
))))))).))
))))).)))))
)....)))).))))))))..))))).
SIMILARITIES
miRBase
csi-MIR160
:
6e-74
PMRD
ptc-miR160b
:
6e-31
microPC
miR160
:
6e-28
UniProt
no hits
RFAM
mir-160: 7e-28
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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