ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTATGCCTCCCATTC miRNA* GTGGGAGCGTGGGGTAAGAAG mismatches: 2 bulges: 2 |
pre-miRNA
GTGGGAGCGTGGGGTAAGAAGTGAAGAAAACGTATAATTTTTCTTTTCTTTTTCAATTGAGAAAGAAAATTACAAATTCAATTTCTTCCCTATGCCTCCC
ATTCCTATGATTT
dot-bracket secondary structure
((((((((((((((.(((((((...(((...(((.........(((((((((((....))))))))))).)))...))).)))))))))))))).)))))
))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGGGAGCGTGGGGTAAGAAGTGAAGAAAACGTATAATTTTTCTTTTCTTTTTCAATTGAGAAAGAAAATTACAAATTCAATTTCTTCCCTATGCCTCCC
ATTCCTATGATTT
dot-bracket secondary structure
((((((((((((((.(((((((...(((...(((.........(((((((((((....))))))))))).)))...))).)))))))))))))).)))))
))...........
SIMILARITIES| miRBase csi-MIR482a: 5e-28 PMRD gma-miR482: 0.00002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
