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ABOUT THIS RECORD

ID: MNEST000421
species: Citrus sinensis
miRNA family: miR172a
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCAGCGTCCTCAAGATTCACA

miRNA*
 AGAATCTTGATGATGCTGCAA

mismatches: 4
bulges: 0
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pre-miRNA
 ACCTTAAAACAGTCGTTGCTCGCTGTAGCAGCGTCCTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCTTTTTTGCTTGCCTTGGT
TTTTGTGAGGGAGAATCTTGATGATGCTGCAACGGCGATTAATGACTAGCTACCAA

dot-bracket secondary structure
..........((((((((.(((((((.((((((((.(((((((((...(((((.((((.((((..(((((.((..........)).))))))))))))).
..))).))....))))))))).)))))))).))))))).)))))))).........


SIMILARITIES
miRBase csi-MIR172a: 1e-35

PMRD ath-miR172d: 0.000002

microPC miR172: 1e-19		UniProt no hits

RFAM mir-172: 0.00004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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