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ABOUT THIS RECORD
ID:
MNEST000422
species:
Citrus sinensis
miRNA family:
MIRf137
source:
miRNEST
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTGATGATGCTGCAACGGC
miRNA*
TGTAGCAGCGTCCTCAAGATT
mismatches:
2
bulges:
0
View larger
pre-miRNA
CCTTAAAACAGTCGTTGCTCGC
TGTAGCAGCGTCCTCAAGATT
CACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCTTTTTTGCTTGCCTTGGTT
TTTGTGAGGGAGAA
TCTTGATGATGCTGCAACGGC
GATTAATGACTAGCTACCA
dot-bracket secondary structure
.........((((((((.((((
(((.((((((((.((((((((
(...(((((.((((.((((..(((((.((..........)).)))))))))))))..
.))).))....)))
)))))).)))))))).)))))
)).))))))))........
SIMILARITIES
miRBase
csi-MIR172a
:
4e-35
PMRD
ath-miR172d
:
0.000002
microPC
miR172
:
1e-19
UniProt
no hits
RFAM
mir-172: 0.00004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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