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ABOUT THIS RECORD

ID: MNEST000423
species: Citrus sinensis
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGCTGCAAC

miRNA*
 AGCAGCGACCTCAAGATTCAC

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TTAAAACAGTCATTGCTCGCTGGAGCAGCGACCTCAAGATTCACATCCGGTCTAGAGGCAAAAGCAACAATTTTTCTTCATTTTTGCTTGCCTTGGCTTT
TGTCATGGAGAATCTTGATGATGCTGCAACGGGGATTAGTGACTAGCTAC

dot-bracket secondary structure
.......((((((((.((.(((..((((((...(((((((((...((((...(((((((..((((((.(((........))).))))))......)))))
))...)))))))))))))...))))))..))).)).))))))))......


SIMILARITIES
miRBase csi-MIR172a: 2e-55

PMRD zma-miR172d: 0.0001

microPC miR172: 2e-37		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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