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ABOUT THIS RECORD

ID: MNEST000424
species: Citrus sinensis
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCGGCAA

miRNA*
 GCAGCGACGTCAAGATTCACA

mismatches: 4
bulges: 0
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pre-miRNA
 TGCTCGCTGTAGCAGCGACGTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCAGTTTGGCTTGCCTGGGTTTTTGTCAGTGAGAAT
CTTGATGATGCGGCAACGGCGATG

dot-bracket secondary structure
...(((((((.((.(((.(((((((((((.(((.(((.((..(((((..(((...((((.......))))..)))))))).))...)))...))).))))
))))))).))).)).)))))))..


SIMILARITIES
miRBase csi-MIR172b: 3e-66

PMRD ptc-miRf11023-akr: 0.0001

microPC miR172: 6e-40		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: csi-MIR172b from miRBase (MNEST041234)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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