ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGCTCGAGG mismatches: 3 bulges: 0 |
pre-miRNA
GGGGATCTTTTTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTGCTTGTTGATCCATTAATTTTACGTATTCTCTCATAGATCTAGCATCTGAATG
GTGGATAACAATATACGGATTCAGCTTATTTGGCGTCGTCGGACCAGGCTTCATTCCCCCCAATATATTGCTTCCAT
dot-bracket secondary structure
..(((......(((.(((.((((((((..((((((.((((.(((...(((.((((((((............(((((..((((((((.....))))..)))
).))))).........))).)))))......)))))).)))).))))))..)))))))).))).))).....)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGATCTTTTTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTGCTTGTTGATCCATTAATTTTACGTATTCTCTCATAGATCTAGCATCTGAATG
GTGGATAACAATATACGGATTCAGCTTATTTGGCGTCGTCGGACCAGGCTTCATTCCCCCCAATATATTGCTTCCAT
dot-bracket secondary structure
..(((......(((.(((.((((((((..((((((.((((.(((...(((.((((((((............(((((..((((((((.....))))..)))
).))))).........))).)))))......)))))).)))).))))))..)))))))).))).))).....)))..
SIMILARITIES| miRBase csi-MIR166e: 4e-91 PMRD cpt-miR166: 4e-85 microPC miR166: 2e-74 | UniProt no hits RFAM mir-166: 0.0000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
