miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST000433
species:
Citrus sinensis
miRNA family:
MIR162
source:
miRNEST
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA
miRNA*
GAGGCAGCGGTTCATCGATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
TTTAACAGAAAATAGAGAGAGTGAAGTCACTG
GAGGCAGCGGTTCATCGATC
ACTTTGTGCAAATTTTGTTGTGAAAAATAACACAAAATACATGAATCG
A
TCGATAAACCTCTGCATCCA
GCGCTCACTCCAACTCTATTCATCGCTCC
dot-bracket secondary structure
.......((.(((((((.((((((.((..(((
((.((((.((((.(((((((
..((((((...(((((((.((........))))))))).))))))..)
)
))))).)))).)))).))))
).))))))))...)))))))..)).....
SIMILARITIES
miRBase
csi-MIR162
:
7e-77
PMRD
ghr-miR162a
:
1e-26
microPC
miR162
:
1e-47
UniProt
no hits
RFAM
MIR162_2: 1e-17
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record