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ABOUT THIS RECORD

ID: MNEST000434
species: Citrus sinensis
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGGCAGCGGTTCATCGAT

miRNA*
 CGATAAACCTCTGCATCCAGC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATTTAACAGAAAATAGAGAGAGTGAAGTCACTGGAGGCAGCGGTTCATCGATCACTTTGTGCAAATTTTGTTGTGAAAAATAACACAAAATACATGAATC
GATCGATAAACCTCTGCATCCAGCGCTCACTCCAACTCTATTCATCGCTCCG

dot-bracket secondary structure
........((.(((((((.((((((.((..(((((.((((.((((.(((((((..((((((...(((((((.((........))))))))).))))))..
))))))).)))).)))).))))).))))))))...)))))))..))......


SIMILARITIES
miRBase csi-MIR162: 2e-77

PMRD ghr-miR162a: 1e-26

microPC miR162: 1e-47		UniProt no hits

RFAM MIR162_2: 1e-17		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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