ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIRf1017
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTATCTGCATTTGCACCTG miRNA* GTTGCAAGTGCAGATGAATGC mismatches: 2 bulges: 0 |
pre-miRNA
TATCCTTTATCTGCATTTGCACCTGCATCTTGTTGCGTTATCTGGTTCTGGTTCGTAAAAGCCAAAGCACAAGAAGAGCCAATAGCCGTCGGCAGATATG
GTGGCAGCATGGGGTTATATGCATCAAGGTGCAGTTGCAAGTGCAGATGAATGCC
dot-bracket secondary structure
.....((((((((((((((((.((((((((((.(((((..(((.(((.(((((......))))).)))...)))..((((..((((.((((.((....))
.)))).)).)).))))..))))).)))))))))).))))))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATCCTTTATCTGCATTTGCACCTGCATCTTGTTGCGTTATCTGGTTCTGGTTCGTAAAAGCCAAAGCACAAGAAGAGCCAATAGCCGTCGGCAGATATG
GTGGCAGCATGGGGTTATATGCATCAAGGTGCAGTTGCAAGTGCAGATGAATGCC
dot-bracket secondary structure
.....((((((((((((((((.((((((((((.(((((..(((.(((.(((((......))))).)))...)))..((((..((((.((((.((....))
.)))).)).)).))))..))))).)))))))))).))))))))))))))))....
SIMILARITIES| miRBase csi-MIR530b: 5e-84 PMRD ptc-miRf11519-akr: 0.000000008 microPC miR530: 4e-72 | UniProt no hits RFAM MIR530: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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