ABOUT THIS RECORDspecies: Citrus unshiu
miRNA family: MIR530
source: miRNEST
Taxonomy by NCBI:
Citrus unshiu Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTTG miRNA* AGGTGCAGCTGTATATGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
TGGCACGAGATTTTTCTGCATTTGCACCTGCACCTTGCTGTGCTGTTATCTGGGTTGACGAAGATCATCATGATGATCAGCTTCAAAACTCGAAAGCATGA
AGGTGCAGCTGTATATGCAGGTGAATGCCATTT
dot-bracket secondary structure
)((((.....(((.(((((((.((((.(((((((((..((((((......((((((...((((...((((...))))...))))..))))))..)))))))
)))))))).)))).))))))).)))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGCACGAGATTTTTCTGCATTTGCACCTGCACCTTGCTGTGCTGTTATCTGGGTTGACGAAGATCATCATGATGATCAGCTTCAAAACTCGAAAGCATGA
AGGTGCAGCTGTATATGCAGGTGAATGCCATTT
dot-bracket secondary structure
)((((.....(((.(((((((.((((.(((((((((..((((((......((((((...((((...((((...))))...))))..))))))..)))))))
)))))))).)))).))))))).)))))))....
SIMILARITIES| miRBase csi-MIR530a: 4.0E-69 PMRD ptc-miRf11026-akr: 3.0E-5 microPC miR1030: 3.0E-5 | UniProt no hits RFAM 0MIR530: 0.0001 | most similar mature miRNAs |
Identical with: csi-MIR530a from miRBase (MNEST041262) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
