ABOUT THIS RECORDspecies: Citrus unshiu
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Citrus unshiu Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGC miRNA* CGGGGAACAGGCAGAGCATGG mismatches: 4 bulges: 0 |
pre-miRNA
CAGACAAAAGACGGGGAACAGGCAGAGCATGGATGGAACCATTAACAGGTTCTCTGTTTTGGCTCCTCCCATGCACTGCCTCTTCCCTGGCTCTCTGC
dot-bracket secondary structure
)..........(((((((.((((((.((((((..(((.(((..((((((...)))))).))).)))..)))))).)))))).))))))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGACAAAAGACGGGGAACAGGCAGAGCATGGATGGAACCATTAACAGGTTCTCTGTTTTGGCTCCTCCCATGCACTGCCTCTTCCCTGGCTCTCTGC
dot-bracket secondary structure
)..........(((((((.((((((.((((((..(((.(((..((((((...)))))).))).)))..)))))).)))))).))))))).........
SIMILARITIES| miRBase csi-MIR408: 3.0E-50 PMRD cpt-miR408: 3.0E-50 microPC miR408: 5.0E-18 | UniProt no hits RFAM 8MIR408: 2.0E-17 | most similar mature miRNAs |
Identical with: csi-MIR408 from miRBase (MNEST041252), cpt-miR408 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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