ABOUT THIS RECORDspecies: Citrus unshiu
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Citrus unshiu Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCGCTGCCTCTTCCCTGGC miRNA* CGGGGAACAGGCAGAGCATGG mismatches: 4 bulges: 0 |
pre-miRNA
AGACAAAAGACGGGGAACAGGCAGAGCATGGATGGAACCATTAACAGGTTCTCTGTTTTGGCTCCTCCCATGCGCTGCCTCTTCCCTGGCTCTCTGC
dot-bracket secondary structure
..........(((((((.((((((.((((((..(((.(((..((((((...)))))).))).)))..)))))).)))))).))))))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGACAAAAGACGGGGAACAGGCAGAGCATGGATGGAACCATTAACAGGTTCTCTGTTTTGGCTCCTCCCATGCGCTGCCTCTTCCCTGGCTCTCTGC
dot-bracket secondary structure
..........(((((((.((((((.((((((..(((.(((..((((((...)))))).))).)))..)))))).)))))).))))))).........
SIMILARITIES| miRBase csi-MIR408: 8e-48 PMRD cpt-miR408: 8e-48 microPC miR408: 0.000000000000001 | UniProt no hits RFAM MIR408: 0.000000000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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